| IATA | ICAO | Name | City | Type |
|---|---|---|---|---|
| - | HUAJ | Adjumani Airport | Adjumani | Small Airport |
| RUA | HUAR | Arua Airport | Arua | Medium Airport Scheduled |
| ULU | HUGU | Gulu Airport | Gulu | Medium Airport Scheduled |
| - | UG-0006 | Kalongo Airport | Kalongo | Small Airport |
| - | HUKD | Kidepo Airport | Kidepo Valley National Park | Small Airport |
| - | HUKT | Kitgum Airport | Kitgum | Small Airport |
| - | UG-0005 | Koboko Airport | Koboko | Small Airport |
| - | HUKO | Kotido Airport | Kotido | Small Airport |
| - | HULI | Lira Airport | Lira | Small Airport |
| - | UG-0008 | Matany Airstrip | Matany | Small Airport |
| - | HUMO | Moroto Airport | Moroto | Small Airport |
| OYG | UG-OYG | Moyo Airport | Moyo | Small Airport |