| IATA | ICAO | Name | City | Type |
|---|---|---|---|---|
| - | ID-0212 | Arso Airport | Arso | Closed Airport |
| - | ID-0174 | Aurimi Wzil Airstrip | Aurimi Wzil | Small Airport |
| - | ID-0175 | Bareri Airport | Bareri | Small Airport |
| - | ID-0222 | Begowre Airstrip | Begowre | Small Airport |
| - | ID-0213 | Biak Manuhua Airport | Biak | Closed Airport |
| - | ID-0033 | Biri Airstrip | Biri | Small Airport |
| - | ID-0254 | Cyclops Airfield | Sentani | Closed Airport |
| DRH | WAJC | Dabra Airport | Dabra | Small Airport |
| - | ID-0044 | Derapos Airstrip | Derapos | Small Airport |
| DJJ | WAJJ | Dortheys Hiyo Eluay International Airport | Sentani | Large International Airport Scheduled |
| - | ID-0045 | Dou Airstrip | Dou | Small Airport |
| - | ID-0046 | Doyo Baru Airport | Doyo Baru | Small Airport |
| - | ID-0049 | Eri Airstrip | Eri | Small Airport |
| - | ID-0052 | Foao Airstrip | Foao | Small Airport |
| BIK | WABB | Frans Kaisiepo Airport | Biak | Medium Airport Scheduled |
| - | ID-0057 | Haya Airstrip | Haya | Small Airport |
| - | ID-0221 | Hollandia Airfield | Sentani | Closed Airport |
| - | ID-0062 | Hulu Atas Airstrip | Hulu Atas | Small Airport |
| - | ID-0064 | Kaiy Airstrip | Kaiy | Small Airport |
| - | ID-0002 | Kamiri Airfield | Kamiri-Numfoor Island | Closed Airport |
| - | ID-0074 | Kasonaweja Airstrip | Kasonaweja | Small Airport |
| - | ID-0075 | Kaure Airstrip | Kaure | Small Airport |
| FOO | WABF | Kornasoren Airport | Kornasoren | Small Airport |
| - | ID-0086 | Kustera Airstrip | Kustera | Small Airport |
| - | ID-0087 | Kwerba Airstrip | Kwerba | Small Airport |
| - | ID-0089 | Lake Holmes Airstrip | Danau Bira | Small Airport |
| LHI | WAJL | Lereh Airport | Lereh-Papua Island | Small Airport |
| ZRM | WAJI | Mararena Sarmi Airport | Sarmi | Small Airport |
| - | ID-0303 | Mbugulo Airstrip | Mapa | Small Airport |
| - | ID-0001 | Namber Airfield | Namber-Numfoor Island | Closed Airport |
| - | ID-0360 | Nisikni Airstrip | Nisikni | Small Airport |
| - | ID-0125 | Owi Airfield | Owi Island | Closed Airport |
| - | ID-0115 | Pagai Airstrip | Pagai | Small Airport |
| - | ID-0117 | Papasena Airstrip | Papasena | Small Airport |
| - | ID-0129 | Ros Bori Airstrip | Ros Bori - Yapen Island | Small Airport |
| SEH | WAJS | Senggeh Airport | Senggeh | Small Airport |
| - | ID-0137 | Sikari Airstrip | Sikari | Small Airport |
| - | ID-0192 | Sorido Airfield | Biak | Closed Airport |
| ZRI | WABO | Stevanus Rumbewas Airport | Serui | Medium Airport |
| - | ID-0328 | Sudjarwo Tjondronegoro Airport | Serui | Closed Airport |
| - | ID-0149 | Taiyeve Airstrip | Taiyeve | Small Airport |
| - | ID-0150 | Takar Airstrip | Takar | Small Airport |
| - | ID-0226 | Taria Airstrip | Taria | Small Airport |
| - | ID-0153 | Tayayi Airstrip | Tayayi | Small Airport |
| - | ID-0359 | Tomboki Airstrip | Tomboki | Small Airport |
| - | ID-0330 | Ubrub Airport | Ubrub | Closed Airport |
| - | ID-0157 | Waff Airstrip | Waff | Small Airport |
| - | WAJD | Wakde Airport | Masi Masi Island | Small Airport |
| - | ID-0329 | Waris Airport | Swach | Closed Airport |
| - | ID-0324 | Yuruf Airport | Amgotro | Closed Airport |