| Name | Type | IATA | ICAO | City |
|---|---|---|---|---|
| Amahai Airport | Small Airport | AHI | WAPA |
Amahai |
| Aru Airport | Small Airport | - | WA1B |
Fekfetal / Jerdera-Trangan Island |
| Bandanaira Airport | Small Airport | NDA | WAPC |
Bandanaira |
| Benjina Airport | Small Airport | BJK | WAPK |
Maikoor Island |
| Bula Airport | Small Airport | - | WAPB |
Bula |
| Dumatubin Airport | Small Airport | - | WAPL |
Langgur |
| Jos Orno Imsula Airport | Small Airport Scheduled | JIO | JIO |
Tiakur |
| Karel Sadsuitubun Airport | Medium Airport Scheduled | LUV | WAPF |
Langgur |
| Kufar Airport | Small Airport | - | WAPU |
- |
| Larat Airport | Small Airport | - | WAPO |
Kepulauan Larat |
| Mathilda Batlayeri Airport | Small Airport Scheduled | SXK | WAPS |
Saumlaki-Yamdena Island |
| Namlea Airport | Small Airport | - | WAPR |
Namlea |
| Namniwel Airport | Medium Airport Scheduled | NAM | WAPN |
Namniwel |
| Namrole Airport | Small Airport | NRE | WAPG |
Namrole |
| Pattimura International Airport | Medium Airport Scheduled | AMQ | WAPP |
Ambon |
| Rar Gwamar Airport | Small Airport | DOB | WAPD |
Dobo-Warmar Island |
| Saumlaki/Olilit Airport | Small Airport | - | WAPI |
Saumlaki-Yamdena Island |
| Selaru Airstrip | Closed Airport | - | ID-0018 |
Selaru Island |
| Wahai Airport | Small Airport | WBA | WAPV |
Wahai |
| Wetar Island Airport | Small Airport | - | ID-0382 |
Maluku Barar Daya |