| IATA | ICAO | Name | City | Type |
|---|---|---|---|---|
| - | MSBS | Barillas Airport | Barrillas | Small Airport |
| - | MSCN | Casas Nuevas Airport | Jiquilisco | Small Airport |
| - | MSCD | Ceiba Doblada Airport | Ceiba Doblada | Small Airport |
| - | MSCM | Corral De Mulas Airport | Corral de Mulas | Small Airport |
| - | MSES | Espiritu Santo Airport | Espíritu Santo | Small Airport |
| - | MSCR | La Carrera Airport | Jiquilisco | Small Airport |
| - | MSCH | La Chepona Airport | La Chepona | Small Airport |
| - | SV-0006 | Puerto El Triunfo Airport | Puerto El Triunfo | Small Airport |
| - | MSSJ | Punta San Juan Airport | Corral de Mulas | Small Airport |
| - | SV-0005 | Usulutan Private Airport | Usulutan | Small Airport |