| Name | Type | IATA | ICAO | City |
|---|---|---|---|---|
| Hunter (Morotai) Airport | Small Airport | - | MY-0015 |
Morotai |
| Jeroco Airport | Small Airport | - | MY-0016 |
Jeroco |
| Kelabakan Airport | Small Airport | - | MY-0017 |
Kelabakan |
| Keningau Airport | Small Airport | KGU | WBKG |
Keningau |
| Kota Belud Airport | Small Airport | - | WBKB |
Kota Belud |
| Kota Kinabalu International Airport | Medium Airport Scheduled | BKI | WBKK |
Kota Kinabalu |
| Kuala Kahaba Airport | Small Airport | - | MY-0018 |
Kuala Kahaba |
| Kuala Penyu Airport | Small Airport | - | WBKU |
Kuala Penyu |
| Kudat Airport | Small Airport Scheduled | KUD | WBKT |
Kudat |
| Lahad Datu Airport | Medium Airport Scheduled | LDU | WBKD |
Lahad Datu |
| Layang-Layang Airport | Small Airport | LAC | LAC |
Pulau Layang-Layang (Swallow Reef) |
| Long Pasia Airport | Small Airport | GSA | WBKN |
Long Miau |
| Marak Parak Airport | Small Airport | - | MY-0020 |
Marak Parak |
| Meligan Airport | Small Airport | - | MY-0021 |
Meligan |
| Meridi Airport | Small Airport | - | MY-0022 |
Meridi |
| Mostyn Airport | Closed Airport | - | MY-0051 |
Mostyn |
| Nangoh Airport | Small Airport | - | MY-0023 |
Nangoh |
| Pamol Airport | Small Airport | PAY | WBKP |
Pamol |
| Pandewan Airport | Small Airport | - | MY-0024 |
Pandewan |
| Ranau Airport | Small Airport | RNU | WBKR |
Ranau |
| Sahabat [Sahabat 16] Airport | Small Airport | SXS | WBKH |
Sahabat |
| Sandakan Airport | Medium Airport Scheduled | SDK | WBKS |
Sandakan |
| Semporna Airport | Small Airport | SMM | WBKA |
Semporna |
| Sepulot Airport | Small Airport | SPE | WBKO |
Sepulot |
| Sipitang Airport | Small Airport | SPT | MY-SPT |
Sipitang |
| Sook Airport | Small Airport | - | MY-0026 |
Sook |
| Station Lima Helipad | Heliport | - | MY-0042 |
Pulau Layang-Layang (Swallow Reef) |
| Station Mike Helipad | Heliport | - | MY-0002 |
Terumbu Mantanani (Mariveles Reef) |
| Station Papa Helipad | Heliport | - | MY-0001 |
Terumbu Peninjau (Investigator Shoal) |
| Station Sierra Helipad | Heliport | - | MY-0043 |
Terumbu Siput (Erica Reef) |
| Station Uniform Helipad | Heliport | - | MY-0010 |
Terumbu Ubi (Ardasier Reef) |
| Tawau Airport | Medium Airport Scheduled | TWU | WBKW |
Tawau |
| Telupid Airport | Small Airport | TEL | WBKE |
Telupid |
| Tomanggong Airport | Small Airport Scheduled | TMG | WBKM |
Tomanggong |
| Ulu Tomani Airport | Small Airport | - | MY-0027 |
Ulu Tomani |
| Wallace Bay Airport | Small Airport | - | MY-0028 |
Wallace Bay |