| IATA | ICAO | Name | City | Type |
|---|---|---|---|---|
| - | JP-1136 | Akusekijima Heliport | Toshima | Heliport |
| ASJ | RJKA | Amami Airport | Amami | Medium Airport Scheduled |
| - | JP-1823 | Anno Airfield | Nishinoomote | Closed Airport |
| - | JP-2535 | Bansei Airfield | Minamisatsuma | Closed Airport |
| - | JP-1336 | Chiran Airfield | Minamikyushu | Closed Airport |
| - | JP-2289 | Former Tanegashima Airport | Nakatane | Closed Airport |
| - | JP-2288 | Gajajima Heliport | Toshima | Heliport |
| - | JP-1249 | Hamacho Heliport | Kagoshima | Heliport |
| - | JP-1338 | Ibusuki Airfield | Ibusuki | Closed Airport |
| - | JP-1142 | JASDF Okinoerabu Sub Base Heliport | China | Heliport |
| - | JP-2210 | JGSDF Camp Amami Heliport | Amami | Heliport |
| - | RJFY | JMSDF Kanoya Air Base | Kanoya | Medium Airport |
| KOJ | RJFK | Kagoshima Airport | Kagoshima | Large International Airport Scheduled |
| - | JP-1253 | Kagoshima City Hospital Helipad | Kagoshima | Heliport |
| - | JP-1210 | Kagoshima Naval Airfield | Kagoshima | Closed Airport |
| - | JP-2343 | Kasanohara Airfield | Kanoya | Closed Airport |
| - | JP-1127 | Kashima Heliport | Satsumasendai | Heliport |
| - | JP-1129 | Katadomari Heliport | Mishima | Heliport |
| KKX | RJKI | Kikai Airport | Kikai | Medium Airport Scheduled |
| - | JP-1137 | Kodakarajima Heliport | Toshima | Heliport |
| - | JP-1212 | Koniya Naval Airfield | Setouchi | Closed Airport |
| - | JP-1132 | Kuchinoerabu Heliport | Yakushima | Heliport |
| - | JP-1133 | Kuchinoshima Heliport | Toshima | Heliport |
| - | JP-1131 | Mageshima Airport | Nishinoomote | Small Airport |
| - | JP-1822 | Makurazaki Airport | Makurazaki | Closed Airport |
| - | JP-1252 | Makurazaki Heliport | Makurazaki | Heliport |
| - | JP-1337 | Mansei Airfield | Hioki | Closed Airport |
| - | JP-1134 | Nakanoshima Heliport | Toshima | Heliport |
| TNE | RJFG | New Tanegashima Airport | Tanegashima | Medium Airport Scheduled |
| OKE | RJKB | Okinoerabu Airport | Wadomari | Medium Airport Scheduled |
| - | JP-1128 | Osato Heliport | Mishima | Heliport |
| - | JP-1139 | Oshima Hospital Heliport | Amami | Heliport |
| - | ZZZZ | Satsuma Iōjima Airport | Mishima | Small Airport |
| - | JP-0461 | Suwanose-jima Airport | Toshima | Small Airport |
| - | JP-1135 | Tairajima Heliport | Toshima | Heliport |
| - | JP-1138 | Takarajima Heliport | Toshima | Heliport |
| - | JP-1130 | Takeshima Heliport | Mishima | Heliport |
| - | JP-1824 | Tanegashima Naval Airfield | Nakatane | Closed Airport |
| - | JP-1250 | Taniyama Heliport | Kagoshima | Heliport |
| - | JP-3550 | Tean Heliport | Setouchi | Heliport |
| - | JP-1211 | Tenpozan Naval Seaplane Base | Kagoshima | Closed Airport |
| TKN | RJKN | Tokunoshima Airport | Amagi | Medium Airport Scheduled |
| - | JP-1140 | Ukejima Heliport | Setouchi | Heliport |
| KUM | RJFC | Yakushima Airport | Yakushima | Medium Airport Scheduled |
| RNJ | RORY | Yoron Airport | Yoron | Medium Airport Scheduled |
| - | JP-1141 | Yoroshima Heliport | Setouchi | Heliport |