| IATA | ICAO | Name | City | Type |
|---|---|---|---|---|
| AXJ | RJDA | Amakusa Airport | Amakusa | Small Airport Scheduled |
| - | JP-3228 | Arila Amakusa Heliport (MetaPort) | Amakusa | Heliport |
| - | JP-0468 | Aso Auxiliary Airfield | Aso | Small Airport |
| - | JP-1244 | Aso Heliport | Aso | Heliport |
| - | JP-3230 | Fisharena Amakusa Heliport | Kamiamakusa | Heliport |
| - | JP-3232 | Former Yujaku Elementary School Heliport | Aso | Heliport |
| - | JP-3128 | Funatsu Emergency Heliport | Kosa | Heliport |
| - | JP-1239 | Japan Red Cross Kumamoto Hospital Helipad | Kumamoto | Heliport |
| - | JP-2301 | JCHO Kumamoto General Hospital | Yatsushiro | Heliport |
| - | JP-1825 | Kodonbaru Airfield | Asagiri | Closed Airport |
| KMJ | RJFT | Kumamoto Airport | Kumamoto | Medium Airport Scheduled |
| - | JP-0492 | Kumamoto Prefectural Police Heliport | Kumamoto | Heliport |
| - | JP-2300 | Kumamoto Senior Hospital | Yatsushiro | Heliport |
| - | JP-1240 | Kumamoto University Hospital Helipad | Kumamoto | Heliport |
| - | JP-3129 | Kumanosho Airfield | Kumamoto | Closed Airport |
| - | JP-1245 | Lake Hanjaku Heliport | Kikuchi | Heliport |
| - | JP-1827 | Miyaji Airfield | Aso | Closed Airport |
| - | JP-3507 | Mount Aso Kako-higashi Heliport | Aso | Heliport |
| - | JP-3234 | Mount Aso Kusasenri Heliport | Aso | Heliport |
| - | JP-3506 | Mount Aso Nakadake Heliport | Minamiaso | Heliport |
| - | JP-3505 | Mount Aso Sanjo Heliport | Minamiaso | Heliport |
| - | JP-3504 | Mount Aso Sensuikyo Heliport | Aso | Heliport |
| - | JP-1260 | Nagasu Airfield | Nagasu | Closed Airport |
| - | JP-1242 | NHO Kumamoto Medical Center Helipad | Kumamoto | Heliport |
| - | JP-3231 | Nishinippon Airways Kagami Heliport | Yatsushiro | Heliport |
| - | JP-1241 | Saiseikai Kumamoto Hospital Helipad | Kumamoto | Heliport |
| - | JP-0467 | Shirakawa Gliderport | Kumamoto | Small Airport |
| - | JP-3123 | Shirakawa Heliport | Kumamoto | Heliport |
| - | JP-1243 | Sojo University Heliport | Kumamoto | Heliport |
| - | JP-3233 | Space Aviation Heliport | Minamiaso | Heliport |
| - | JP-1303 | Taragi Auxiliary Airfield | Taragi | Small Airport |
| - | JP-1334 | Ubuyama Auxiliary Airfield | Ubuyama | Small Airport |
| - | JP-1826 | Ueki Gliderfield | Koshi | Closed Airport |
| - | JP-1261 | Yamaga Airfield | Nagomi | Closed Airport |