| IATA | ICAO | Name | City | Type |
|---|---|---|---|---|
| - | JP-2358 | Akasaki Heliport | Sasebo | Heliport |
| - | JP-3396 | Arikawa Heliport | Shinkamigoto | Heliport |
| FUJ | RJFE | Fukue Airport | Goto | Medium Airport Scheduled |
| - | JP-3394 | Fukuejima Airfield | Goto | Closed Airport |
| IKI | RJDB | Iki Airport | Iki | Medium Airport Scheduled |
| - | JP-2744 | JASDF Unishima Sub Base Heliport | Tsushima | Heliport |
| - | JP-2356 | JCHO Isahaya General Hospital Heliport | Isahaya | Heliport |
| - | JP-2745 | JMSDF Kamitsushima Monitoring Station Heliport | Tsushima | Heliport |
| OMJ | RJDU | JMSDF Omura Air Base | Nagasaki | Small Airport |
| - | JP-2357 | JMSDF Sasebo Base Sakibe Heliport | Sasebo | Heliport |
| - | JP-3099 | JMSDF Sasebo Base Sakibe Seaplane Base | Sasebo | Seaplane Base |
| - | JP-2748 | JMSDF Shimotsushima Observation Station Heliport | Tsushima | Heliport |
| - | RJDK | Kamigoto Airport | Shinkamigoto | Small Airport |
| - | JP-3397 | Kogushigo Heliport | Shinkamigoto | Heliport |
| - | JP-1246 | Miyazaki Hospital Heliport | Isahaya | Heliport |
| NGS | RJFU | Nagasaki Airport | Nagasaki | Medium Airport Scheduled |
| - | JP-2354 | Nagasaki Goto Central Hospital Heliport | Goto | Heliport |
| - | JP-2355 | Nagasaki Shinbun Heliport | Nagasaki | Heliport |
| - | JP-2353 | Nagasaki University Hospital Heliport | Nagasaki | Heliport |
| - | JP-3395 | Narushima Heliport | Goto | Heliport |
| - | JP-2351 | NHO Nagasaki Kawatana Medical Center Heliport | Kawatana | Heliport |
| - | JP-2352 | NHO Nagasaki Medical Center Heliport | Omura | Heliport |
| - | RJDO | Ojika Airport | Ojika | Small Airport |
| - | JP-1201 | Sasebo Airfield | Sasebo | Closed Airport |
| - | JP-1202 | Sasebo Heliport | Sasebo | Heliport |
| - | JP-1330 | Takashima Heliport | Matsuura | Heliport |
| - | JP-1123 | Tonosaki Heliport | Tsushima | Heliport |
| TSJ | RJDT | Tsushima Airport | Tsushima | Medium Airport Scheduled |
| - | JP-1124 | Tsushima Heliport | Tsushima | Heliport |
| - | JP-1262 | Tsushima Seaplane Base | Tsushima | Seaplane Base |