| IATA | ICAO | Name | City | Type |
|---|---|---|---|---|
| - | JP-1662 | Ayabe Heliport | Ayabe | Heliport |
| - | JP-0830 | Bridgestone Helipad | Fukuchiyama | Heliport |
| - | JP-2984 | Former Takamine Helipad | Kyoto | Closed Airport |
| - | JP-0828 | Fukuchiyama Air Base | Fukuchiyama | Closed Airport |
| - | JP-1853 | Fukuchiyama City Hospital Heliport | Fukuchiyama | Heliport |
| - | JP-0827 | Fukuchiyama Heliport | Fukuchiyama | Heliport |
| - | JP-1693 | Ichimori Auxiliary Heliport | Kyotanba | Heliport |
| - | JP-0961 | Japan Coast Guard School Helipad | Maizuru | Heliport |
| - | JP-1008 | Japan Red Cross Kyoto 1st Hospital Helipad | Kyoto | Heliport |
| - | JP-2109 | JGSDF Camp Okubo Heliport | Uji | Heliport |
| - | JP-0829 | JGSDF Osadano Airstrip | Fukuchiyama | Small Airport |
| - | RJBM | JMSDF Maizuru Heliport | Maizuru | Heliport |
| - | JP-1009 | JPD Kyoto Heliport | Kyoto | Heliport |
| - | JP-1056 | Kameoka Special Heliport | Kameoka | Heliport |
| - | JP-1293 | Katsuragawa Gliderfield | Kyoto | Closed Airport |
| - | JP-1013 | Keihoku Heliport | Kyoto | Heliport |
| - | JP-2006 | Koya Heliport | Wazuka | Heliport |
| - | JP-1578 | Kurita Seaplane Base | Miyazu | Closed Airport |
| - | JP-1012 | Kyoto Airfield / Kyoto Aircraft Training Crew Center | Kumiyama | Closed Airport |
| - | JP-1694 | Kyoto Chubu Medical Center Helipad | Nantan | Heliport |
| - | JP-1011 | Kyoto City Fire Department Helipad | Kyoto | Heliport |
| - | JP-1006 | Kyoto City Hospital Heliport | Kyoto | Heliport |
| - | JP-2705 | Kyoto Hotel Okura Helipad | Kyoto | Heliport |
| - | JP-1014 | Kyoto Okamoto Memorial Hospital Helipad | Kumiyama | Heliport |
| - | JP-1015 | Kyoto Prefectural Police Air Base Heliport | Kumiyama | Heliport |
| - | JP-0347 | Kyoto Prefectural Police Headquarters Heliport | Kyoto | Heliport |
| - | JP-0346 | Kyoto Prefectural University Hospital Heliport | Kyoto | Heliport |
| - | JP-0344 | Kyoto Station Heliport | Kyoto | Heliport |
| - | JP-0345 | Kyoto Station West Heliport | Kyoto | Heliport |
| - | JP-1007 | Kyoto University Hospital Helipad | Kyoto | Heliport |
| - | JP-1577 | Kyoto University of Medicine North Medical Center Helipad | Yosano | Heliport |
| - | JP-0885 | Maizuru Emergency Runway | Maizuru | Closed Airport |
| - | JP-0886 | Maizuru Training Heliport | Maizuru | Heliport |
| - | JP-3022 | Marinetopia Heliport | Miyazu | Heliport |
| - | JP-1576 | Mineyama Airfield | Kyotango | Closed Airport |
| - | JP-3185 | Nakagawa Heliport | Kyoto | Heliport |
| - | JP-3258 | Nantan Parking Area Heliport | Nantan | Heliport |
| - | JP-2787 | Nidec Corporation Head Office Building Heliport | Kyoto | Heliport |
| - | JP-1294 | Nijo Castle Airstrip | Kyoto | Closed Airport |
| - | JP-2040 | Odashukuno Seaplane Base | Miyazu | Closed Airport |
| - | JP-2108 | Okubo Airfield | Uji | Closed Airport |
| - | JP-1835 | Shogunzuka Heliport | Kyoto | Heliport |
| - | JP-3273 | Sonobe Park Heliport | Nantan | Heliport |
| - | JP-2985 | Takamine Heliport | Kyoto | Heliport |
| - | JP-2110 | Uji Tokushukai Medical Center Heliport | Uji | Heliport |