| IATA | ICAO | Name | City | Type |
|---|---|---|---|---|
| - | EC-0039 | Agro Aereo Jaramillo Airport | Quevedo | Small Airport |
| - | EC-0036 | Ana María Airport | La Esperanza | Small Airport |
| - | SE13 | Babahoyo North Airport | Babahoyo | Small Airport |
| - | SEBO | Bototillal Airstrip | Ventanas | Small Airport |
| - | EC-0069 | Buena Fe Airport | Buena Fe | Closed Airport |
| - | SEVS | Casa Vinces Airport | - | Small Airport |
| - | SEAZ | Costa Azul Airstrip | Valencia | Small Airport |
| - | SERS | Cristal Airport | Cotopaxi | Small Airport |
| - | EC-0038 | El Guayabo Airport | Quevedo | Small Airport |
| - | EC-0040 | Esterito Airport | Valencia | Small Airport |
| - | SEGL | Guarumal Airport | Guarumal | Small Airport |
| - | SECM | Hacienda Clementina Airport | Pozuelos | Small Airport |
| - | SELJ | Hacienda La Julia Airport | Julia | Small Airport |
| - | SEEH | Heligro Heliport | Los Ríos | Heliport |
| - | EC-0035 | Holandesa Airport | Holandesa | Small Airport |
| - | EC-0037 | La Cadena Airport | Quevedo | Small Airport |
| - | SESO | La Estrella Airport | Puebloviejo | Small Airport |
| - | SELL | La Lolita Airport. | Babahoyo | Small Airport |
| - | SELV | La Virgen Airport | Zapotal | Small Airport |
| - | SELM | Loma Larga Airport | Loma Larga | Small Airport |
| - | SEPZ | Los Perez Airport | Los Perez | Small Airport |
| - | SERI | Maria Cristina Airport | - | Small Airport |
| - | SEMY | Martinica Airport | Martinica | Small Airport |
| - | EC-0003 | Old Santa Rosa Airport | Santa Rosa | Closed Airport |
| - | SEOY | Pantalony Airport | Valencia | Small Airport |
| - | SEQE | Quevedo Airport | Quevedo | Small Airport |
| - | SE15 | Quevedo North Airport | Quevedo | Small Airport |
| - | SEAJ | San Alejandro Airport | Valencia | Small Airport |
| - | SEXS | San Simón Airstrip | Los Rios | Small Airport |
| - | SE10 | Vinces Airport | Vinces | Small Airport |
| - | SEWO | Wongkinmay Airport | Buena Fe | Small Airport |