| IATA | ICAO | Name | City | Type |
|---|---|---|---|---|
| - | SEPS | Amable Calle Gutierrez Airport | Pasaje | Small Airport |
| - | SE07 | Aviandina Heliport | Machala | Heliport |
| - | EC-0043 | Barbones - Samuel Quimi Airport | El Guabo | Small Airport |
| - | EC-0001 | Carabon Airport | Carabon | Small Airport |
| - | SE22 | Celia María Airport | Pasaje | Small Airport |
| - | EC-0064 | General Manuel Serrano Airport | Machala | Closed Airport |
| - | EC-0046 | Huaquillas Airport | Huaquillas | Closed Airport |
| - | SE59 | La Mina Airport | El Guabo | Small Airport |
| - | EC-0044 | Mar y Cielo Heliport | Machala | Heliport |
| ETR | SERO | Santa Rosa - Artillery Colonel Victor Larrea International Airport | Santa Rosa | Medium Airport Scheduled |
| - | SE58 | Solbananas Airport | Buenavista | Small Airport |
| - | SEAV | Teniente Pablo Valdéz Carvallo Heliport | Santa Rosa | Heliport |