| IATA | ICAO | Name | City | Type |
|---|---|---|---|---|
| CYI | RCKU | Chiayi Airport | Shuishang | Medium Airport Scheduled |
| DSX | RCLM | Dongsha Island (Pratas Island) Airport | Kaohsiung (Cijin - Pratas Island) | Small Airport |
| HCN | RCKW | Hengchun Airport | Hengchun | Medium Airport |
| HSZ | RCPO | Hsinchu Air Base | Hsinchu City | Medium Airport |
| HUN | RCYU | Hualien Airport | Hualien City | Medium Airport Scheduled |
| KHH | RCKH | Kaohsiung International Airport | Kaohsiung (Xiaogang) | Large International Airport Scheduled |
| KNH | RCBS | Kinmen Airport | Shang-I | Medium Airport Scheduled |
| KYD | RCLY | Lanyu Airport | Orchid Island | Medium Airport Scheduled |
| GNI | RCGI | Lüdao Airport | Lüdao | Small Airport |
| MFK | RCMT | Matsu Beigan Airport | Matsu (Beigan) | Medium Airport Scheduled |
| LZN | RCFG | Matsu Nangan Airport | Matsu (Nangan) | Medium Airport Scheduled |
| MZG | RCQC | Penghu Magong Airport | Huxi | Medium Airport Scheduled |
| PIF | RCSQ | Pingtung Air Force Base North | Pingtung | Medium Airport Scheduled |
| CMJ | RCCM | Qimei Airport | Qimei | Small Airport |
| RMQ | RCMQ | Taichung International Airport / Ching Chuang Kang Air Base | Taichung (Qingshui) | Medium Airport Scheduled |
| TNN | RCNN | Tainan International Airport / Tainan Air Base | Tainan (Rende) | Medium Airport Scheduled |
| TSA | RCSS | Taipei Songshan Airport | Taipei (Songshan) | Medium Airport Scheduled |
| TTT | RCFN | Taitung Airport | Taitung City | Medium Airport Scheduled |
| TPE | RCTP | Taiwan Taoyuan International Airport | Taoyuan | Large International Airport Scheduled |
| WOT | RCWA | Wang'an Airport | Wang'an | Small Airport |