| IATA | ICAO | Name | City | Type |
|---|---|---|---|---|
| BKM | WBGQ | Bakalalan Airport | Bakalalan | Small Airport Scheduled |
| BBN | WBGZ | Bario Airport | Bario | Medium Airport Scheduled |
| BLG | WBGC | Belaga Airport | Belaga | Small Airport |
| BTU | WBGB | Bintulu Airport | Bintulu | Medium Airport Scheduled |
| KPI | WBGP | Kapit Airport | Kapit | Small Airport |
| KGU | WBKG | Keningau Airport | Keningau | Small Airport |
| KTE | WMKE | Kerteh Airport | Kerteh | Medium Airport |
| BKI | WBKK | Kota Kinabalu International Airport | Kota Kinabalu | Medium Airport Scheduled |
| KUL | WMKK | Kuala Lumpur International Airport | Sepang | Large International Airport Scheduled |
| KUA | WMKD | Kuantan Airport | Kuantan | Medium Airport Scheduled |
| KCH | WBGG | Kuching International Airport | Kuching | Medium Airport Scheduled |
| KUD | WBKT | Kudat Airport | Kudat | Small Airport Scheduled |
| LBU | WBKL | Labuan Airport | Labuan | Medium Airport Scheduled |
| LDU | WBKD | Lahad Datu Airport | Lahad Datu | Medium Airport Scheduled |
| LGK | WMKL | Langkawi International Airport | Langkawi | Medium Airport Scheduled |
| LWY | WBGW | Lawas Airport | Lawas | Small Airport Scheduled |
| LAC | LAC | Layang-Layang Airport | Pulau Layang-Layang (Swallow Reef) | Small Airport |
| LMN | WBGJ | Limbang Airport | Limbang | Medium Airport Scheduled |
| LKH | WBGL | Long Akah Airport | Long Akah | Small Airport |
| LBP | MY-LBP | Long Banga Airport | Long Banga | Small Airport Scheduled |
| LGL | WBGF | Long Lellang Airport | Long Datih | Small Airport Scheduled |
| GSA | WBKN | Long Pasia Airport | Long Miau | Small Airport |
| LSM | WBGD | Long Semado Airport | Long Semado | Small Airport |
| ODN | WBGI | Long Seridan Airport | Long Seridan | Small Airport Scheduled |
| LSU | WBGU | Long Sukang Airport | Long Sukang | Small Airport |
| RDN | WMPR | LTS Pulau Redang Airport | Redang | Small Airport |
| MKZ | WMKM | Malacca International Airport | Malacca | Medium Airport |
| MUR | WBGM | Marudi Airport | Marudi | Medium Airport Scheduled |
| MEP | WMAU | Mersing Airport | Mersing | Small Airport |
| MYY | WBGR | Miri Airport | Miri | Medium Airport Scheduled |
| MKM | WBGK | Mukah Airport | Mukah | Medium Airport Scheduled |
| MZV | WBMU | Mulu Airport | Mulu | Medium Airport Scheduled |
| PAY | WBKP | Pamol Airport | Pamol | Small Airport |
| PEN | WMKP | Penang International Airport | Penang | Medium Airport Scheduled |
| PKG | WMPA | Pulau Pangkor Airport | Pangkor Island | Small Airport Scheduled |
| RNU | WBKR | Ranau Airport | Ranau | Small Airport |
| BWH | WMKB | RMAF Butterworth Air Base | Butterworth | Medium Airport |
| SXS | WBKH | Sahabat [Sahabat 16] Airport | Sahabat | Small Airport |
| SDK | WBKS | Sandakan Airport | Sandakan | Medium Airport Scheduled |
| BSE | WBGN | Sematan Airport | Sematan | Small Airport |
| SMM | WBKA | Semporna Airport | Semporna | Small Airport |
| JHB | WMKJ | Senai International Airport | Johor Bahru | Medium Airport Scheduled |
| SPE | WBKO | Sepulot Airport | Sepulot | Small Airport |
| SBW | WBGS | Sibu Airport | Sibu | Medium Airport Scheduled |
| SPT | MY-SPT | Sipitang Airport | Sipitang | Small Airport |
| SWY | WMBA | Sitiawan Airport | Sitiawan | Small Airport |
| SZB | WMSA | Sultan Abdul Aziz Shah International Airport | Subang | Medium Airport Scheduled |
| AOR | WMKA | Sultan Abdul Halim Airport | Alor Satar | Medium Airport Scheduled |
| IPH | WMKI | Sultan Azlan Shah Airport | Ipoh | Medium Airport Scheduled |
| KBR | WMKC | Sultan Ismail Petra Airport | Kota Baharu | Medium Airport Scheduled |