| Name | Type | IATA | ICAO | City |
|---|---|---|---|---|
| Aespa Airfield | Small Airport | - | EEAE |
Aespa |
| Ämari Air Base | Medium Airport | - | EEEI |
Keila |
| Antsla Airfield | Small Airport | - | EEAA |
Antsla |
| Aruvalla Airfield | Small Airport | - | EE-0017 |
- |
| Aste Air Base | Closed Airport | - | EE-0001 |
Aste |
| Avaste Airfield | Closed Airport | - | EE-0009 |
Avaste |
| Haapsalu Air Base | Closed Airport | - | EE-0002 |
Haapsalu |
| Hiiumaa Hospital Helipad | Heliport | - | EE-0014 |
Kärdla |
| Humala Airfield | Small Airport | - | EEHA |
Humala |
| Jägala Highway Strip | Closed Airport | - | EE-0004 |
Partsaare |
| Jõhvi Airfield | Small Airport | - | EEJI |
Jõhvi |
| Kaavi Airfield | Small Airport | - | EE-0010 |
Kaavi |
| Kagul Air Base | Closed Airport | - | EE-0007 |
- |
| Käina Airfield | Closed Airport | - | EE-0018 |
- |
| Kärdla Airport | Medium Airport Scheduled | KDL | EEKA |
Kärdla |
| Karksi Airfield | Small Airport | - | EEKI |
Karksi |
| Kihnu Airfield | Small Airport | - | EEKU |
Saareküla |
| Kose Airfield | Small Airport | - | EEKO |
Kose |
| Kunda Air Base | Closed Airport | - | EE-9278 |
Kunda |
| Kuressaare Airport | Medium Airport Scheduled | URE | EEKE |
Kuressaare |
| Kuressaare Hospital Helipad | Heliport | - | EE-0013 |
Kuressaare |
| Lange Airfield (Lennundusmuuseum) | Small Airport | - | EELM |
Tartu |
| Lasnamäe Airfield | Closed Airport | - | EE-0008 |
Tallinn |
| Lennart Meri Tallinn Airport | Large International Airport Scheduled | TLL | EETN |
Tallinn |
| Lyckholm Airstrip | Small Airport | - | EELU |
Saare |
| Matka-Lüganuse Airfield | Small Airport | - | EE-0016 |
Lüganuse |
| Muhu Airfield | Small Airport | - | EEMU |
Muhu |
| Mustvee Highway Strip | Closed Airport | - | EE-0019 |
- |
| Narva Airfield | Small Airport | - | EENA |
Narva |
| Nässuma Airstrip | Closed Airport | - | EE-0003 |
Nässuma |
| Nurmsi Airfield | Closed Airport | - | EENI |
Nurmsi |
| Paljassaare Heliport | Heliport | - | EEPS |
Tallinn |
| Pärnu Airport | Medium Airport Scheduled | EPU | EEPU |
Pärnu |
| Paslepa Airfield | Small Airport | - | EEPA |
Paslepa |
| Piibe Airfield | Small Airport | - | EE-0011 |
- |
| Piirissaar Airfield | Closed Airport | - | EE-0006 |
Piirissaar |
| Raadi Air Base | Closed Airport | - | EE-9280 |
Tartu |
| Rakvere Airfield | Small Airport | - | EERE |
Rakvere |
| Rapla Airfield | Small Airport | - | EERA |
Rapla |
| Ridali Airfield | Small Airport | - | EERI |
Suurküla |
| Riidaja Airfield | Small Airport | - | EERD |
Riidaja |
| Roomassaare Seaplane Base | Seaplane Base | - | EE-0005 |
Kuressaare |
| Ruhnu Airfield | Small Airport Scheduled | - | EERU |
Ringsu |
| Salme Heliport | Heliport | - | EESE |
Salme |
| Suurupi Heliport | Heliport | - | EESI |
Suurupi |
| Tabasalu Heliport | Heliport | - | EEHV |
Tabasalu |
| Tallinn Hospital Helipad | Heliport | - | EE-0012 |
Tallinn |
| Tallinn Linnahall Heliport | Heliport Scheduled | CHE | EECL |
Tallinn |
| Tapa Air Base | Closed Airport | - | EE-9279 |
Tapa |
| Tartu Airport | Medium Airport Scheduled | TAY | EETU |
Reola |
| Teenuse-Saare Aerodrome | Small Airport | - | EETS |
Märjamaa |
| Toila Airfield | Small Airport | - | EE-0015 |
Toila |
| Tõrva Air Base | Closed Airport | - | EE-4931 |
Torva |
| Tõutsi Private Airfield | Small Airport | - | EETI |
Tõutsi |
| Valga Air Base | Closed Airport | - | EE-7685 |
Valga |
| Vanamõisa Heliport | Heliport | - | EEHK |
Vanamõisa |
| Varstu Airfield | Small Airport | - | EEVU |
Varstu |
| Vihterpalu Manor Heliport | Heliport | - | EEVP |
Vihterpalu |
| Viljandi Airfield | Small Airport | - | EEVI |
Viljandi |
| Võhma Air Base | Closed Airport | - | EE-1612 |
Vohma |
| Vormsi Airfield | Small Airport | - | EEVO |
Vormsi Island |