| IATA | ICAO | Name | City | Type |
|---|---|---|---|---|
| KDL | EEKA | Kärdla Airport | Kärdla | Medium Airport Scheduled |
| URE | EEKE | Kuressaare Airport | Kuressaare | Medium Airport Scheduled |
| TLL | EETN | Lennart Meri Tallinn Airport | Tallinn | Large International Airport Scheduled |
| EPU | EEPU | Pärnu Airport | Pärnu | Medium Airport Scheduled |
| CHE | EECL | Tallinn Linnahall Heliport | Tallinn | Heliport Scheduled |
| TAY | EETU | Tartu Airport | Reola | Medium Airport Scheduled |