| IATA | ICAO | Name | City | Type |
|---|---|---|---|---|
| ESM | SETN | Carlos Concha Torres International Airport | Tachina | Medium Airport Scheduled |
| ATF | SEAM | Chachoán Regional Airport | Ambato | Medium Airport |
| LOH | SETM | Ciudad de Catamayo Airport | La Toma (Catamayo) | Small Airport Scheduled |
| XMS | SEMC | Coronel E Carvajal Airport | Macas | Medium Airport Scheduled |
| LTX | SELT | Cotopaxi International Airport | Latacunga | Medium Airport Scheduled |
| MEC | SEMT | Eloy Alfaro International Airport | Manta | Medium Airport Scheduled |
| OCC | SECO | Francisco De Orellana Airport | Coca | Medium Airport Scheduled |
| SNC | SESA | General Ulpiano Paez Airport | Salinas | Medium Airport |
| IBB | SEII | General Villamil Airport | Puerto Villamil | Small Airport Scheduled |
| JIP | SEJI | Jipijapa Airport | Jipijapa | Small Airport |
| GYE | SEGU | José Joaquín de Olmedo International Airport | Guayaquil | Large International Airport Scheduled |
| MRR | SEMA | Jose Maria Velasco Ibarra Airport | Macará | Medium Airport |
| TNW | SEJD | Jumandy Airport | Ahuano | Medium Airport |
| TUA | SETU | Lieutenant Colonel Luis A. Mantilla International Airport | Tulcán | Medium Airport Scheduled |
| BHA | SESV | Los Perales Airport | Bahía de Caraquez | Small Airport |
| CUE | SECU | Mariscal Lamar Airport | Cuenca | Medium Airport Scheduled |
| UIO | SEQM | Mariscal Sucre International Airport | Quito | Large International Airport Scheduled |
| MZD | EC-MZD | Méndez Airport | Santiago de Méndez | Small Airport |
| LGQ | SENL | Nueva Loja Airport | Lago Agrio | Small Airport |
| PYO | SEPT | Putumayo Airport | Puerto Putumayo | Small Airport |
| PVO | SEPV | Reales Tamarindos Airport | Portoviejo | Medium Airport |
| PTZ | SESM | Rio Amazonas Airport | Shell Mera | Small Airport |
| SCY | SEST | San Cristóbal Airport | Puerto Baquerizo Moreno | Small Airport Scheduled |
| ETR | SERO | Santa Rosa - Artillery Colonel Victor Larrea International Airport | Santa Rosa | Medium Airport Scheduled |
| GPS | SEGS | Seymour Galapagos Ecological Airport | Isla Baltra | Small Airport Scheduled |
| SUQ | SESC | Sucúa Airport | Sucúa | Small Airport |
| TSC | SETH | Taisha Airport | Taisha | Small Airport |
| TPC | SETR | Tarapoa Airport | Tarapoa | Medium Airport |
| TPN | SETI | Tiputini Airport | Tiputini | Small Airport |