| IATA | ICAO | Name | City | Type |
|---|---|---|---|---|
| AII | HDAS | Ali-Sabieh Airport | Ali-Sabieh | Small Airport |
| JIB | HDAM | Djibouti-Ambouli Airport | Djibouti City | Large International Airport Scheduled |
| MHI | HDMO | Moucha Airport | Moucha Island | Small Airport |
| OBC | HDOB | Obock Airport | Obock | Small Airport |
| TDJ | HDTJ | Tadjoura Airport | Tadjoura | Small Airport |